2022
- Remote Sensing | Free Full-Text | An Unsupervised Canopy-to-Root Pathing (UCRP) Tree Segmentation Algorithm for Automatic Forest Mapping (mdpi.com)
Carpenter, J. et al. 2022. An Unsupervised Canopy-to-Root Pathing (UCRP) Tree Segmentation Algorithm for Automatic Forest Mapping. Remote Sensing. 14(17), 4274.
- Remote Sensing | Free Full-Text | Automated Inventory of Broadleaf Tree Plantations with UAS Imagery (mdpi.com)
Chandrasekaran, A. et al. 2022. Automated inventory of broadleaf tree plantations with UAS imagery. Remote Sensing 14(8), 1931.
- Remote Sensing | Free Full-Text | Comparative Analysis of Multi-Platform, Multi-Resolution, Multi-Temporal LiDAR Data for Forest Inventory (mdpi.com)
Lin, Y.C., Shao, J., Shin, S.-Y., Saka, Z., Joseph, M., Manish, R., Fei, S., Habib, A., 2022. Comparative Analysis of Multi-Platform, Multi-Resolution, Multi-Temporal LiDAR Data for Forest Inventory. Remote Sensing.
14, 649
- Precise Quantification of Land Cover before and after Planned Disturbance Events with UAS-Derived Imagery | Semantic Scholar
Miller, Z., Hupy, J., Hubbard, S., Shao, G. 2022. Precise Quantification of Land Cover before and after Planned Disturbance Events with UAS-Derived Imagery. Drones. 6, 52.
- Preferential allocation of carbohydrate reserves belowground supports disturbance-based management of American chestnut (Castanea dentata) | Semantic Scholar
Montague, M.S., Landhäusser, S.M., McNickle, G.G., Jacobs, D.F. 2022. Preferential allocation of carbohydrate reserves belowground supports disturbance- based management of American chestnut (Castanea dentata). Forest Ecology and Management. 509:120078
- Remote Sensing | Free Full-Text | High-Resolution Canopy Height Model Generation and Validation Using USGS 3DEP LiDAR Data in Indiana, USA (mdpi.com)
Oh, S. et al. 2022.Canopy height model generation and validation using USGS 3DEP LiDAR data in Indiana, USA. Remote Sensing. 14 (4), 935.
- Remote Sensing | Free Full-Text | Comparative Evaluation of a Newly Developed Trunk-Based Tree Detection/Localization Strategy on Leaf-Off LiDAR Point Clouds with Varying Characteristics (mdpi.com)
Zhou, T., dos Santos, R. C., Liu, J., Lin, Y.C., Fei, W.C., Fei, S., and Habib, A., 2022. Comparative Evaluation of a Newly Developed Trunk-Based Tree Detection/Localization Strategy on Leaf-O£ LiDAR Point Clouds with Varying Characteristics. Remote Sensing. 14, no. 15: 3738.
- 7138d2b834f1393a032be394a2dee88c68b9.pdf (semanticscholar.org)
Zhou, T., Fei, S., and Habib., A. 2022. Forest Feature-based LiDAR SLAM (F2-SLAM) for Backpack Systems. Manuscript is finalized for submission to Remote Sensing of Environment.
2021
- Chemically-mediated colonization of black cherry by the peach bark beetle, Phloeotribus liminaris - PubMed (nih.gov)
Ethington, M.W., G.P. Hughes, N.R. VanDerLaan, M.D. Ginzel. 2021. Chemically-mediated colonization of black cherry by the peach bark beetle, Phloeotribus liminaris. Journal of Chemical Ecology. 47 (3): 303-312
- [PDF] A commentary review on the use of normalized difference vegetation index (NDVI) in the era of popular remote sensing | Semantic Scholar
Huang, S., L.N. Tang, J.P. Hupy, Y. Wang, and G.F. Shao. 2021. Commentary review on the use of normalized difference vegetation index (NDVI) in the era of popular remote sensing. Journal of Forestry Research. 32:
1–6.
- [PDF] Vacuum Steam Treatment Effectiveness for Eradication of the Thousand Cankers Disease Vector and Pathogen in Logs From Diseased Walnut Trees | Semantic Scholar
Juzwik, J., A. Yang, S. Heller, M. Moore, Z Chen, M. White, H. Wantuch, M.D. Ginzel, R. Mack. 2021. Vacuum steam treatment effectiveness for eradication of the Thousand cankers disease vector and pathogen in logs from diseased walnut trees. Journal of Economic Entomology. 114 (1): 100 - 111.
- Drones | Free Full-Text | Leaf-Off and Leaf-On UAV LiDAR Surveys for Single-Tree Inventory in Forest Plantations (mdpi.com)
Lin, Y., J. Liu, S. Fei, and A. Habib. 2021. Leaf-off and Leaf-on UAV LiDAR Surveys for Single Tree Inventory in Forest Plantations. Drones. 5(4): 115
- Remote Sensing | Free Full-Text | Comparative Analysis of Multi-Platform, Multi-Resolution, Multi-Temporal LiDAR Data for Forest Inventory (mdpi.com)
Lin, Y., Shao, J., Shin, Y., Saka, Z., Joseph, M., Manish, R., Fei, S., and Habib, A. 2021. Comparative Analysis of Multi-platform, Multi-resolution, and Multi-temporal LiDAR Data for Forest Inventory. (Submitted to Remote Sensing Journal.)
- Application of Postprocessing Kinematic Methods with UAS Remote Sensing in Forest Ecosystems | Semantic Scholar
Miller, Z., J. Hupy, A. Chandrasekaran, G. Shao, and S. Fei. 2021. Application of Post-Processing Kinematic Methods with UAS Remote Sensing in Forest Ecosystems. Journal of Forestry. 119: 454–466.
- Quantification of Land Cover Surrounding Planned Disturbances Using UAS Imagery (purdue.edu)
Miller, Zachary. 2021. Quantification of Land Cover Surrounding Planned Disturbances using UAS Imagery. M.S. Thesis, School of Aviation and Transportation Technology, Purdue University
- (PDF) In Situ Calibration and Trajectory Enhancement of UAV and Backpack LiDAR Systems for Fine-Resolution Forest Inventory (researchgate.net) Ravi, R., Y. Lin, R. Manish, S. Fei, and A. Habib. 2021. Backpack and UAV LiDAR Data Fusion for Trajectory Enhancement and Derivation of Accurate Forest Inventory Metrics. (Submitted to ISPRS Journal for Photogrammetry and Remote Sensing.)
- [PDF] Introducing Image Classification Efficacies | Semantic Scholar Shao, G.F., L.N. Tang, and H. Zhang. 2021. Introducing Image Classification Efficacies. IEEE Access 9:134809-134816.
- Frontiers | Competitive Advantage of Geosmithia morbida in Low-Moisture Wood May Explain Historical Outbreaks of Thousand Cankers Disease and Predict the Future Fate of Juglans nigra Within Its Native Range (frontiersin.org) Williams, G.W., M.D. Ginzel. Competitive advantage of Geosmithia morbida in low-moisture wood may explain historical outbreaks of Thousand cankers disease and predict the future fate of Juglans nigra. Frontiers in Forests and Global Change. 4.
2020
- Consequences of Discount Rate Selection for Financial and Ecological Expectation and Risk in Forest Management 2020. Buongiomo, J., and Zhou, M. Journal of Forest Economics 35(1):1-17.
- Estimating Dynamics of Central Hardwood Forests Using Random Forests 2020. Ma, W., Lin, G., and Liang, J. Ecological Modeling 419:108947.
- A Machine Learning-Based Classification System for Urban Built-Up Areas Using Multiple Classifiers and Data Sources 2020. Sun,L., Tang, L, Shao, G., and Qiu, Q. Remote Sensing 12(1): DOI:10.3390/rs12010091.
- Forest Genomics and Biotechnology 2020. Eds. Meilan, R., Kirst, M published CABI, Boston, MA
- Hardwood Species Show Wide Variability in Response to Silviculture during Reclamation of Coal Mine Sites 2020. Schempf, W.M. and Jacobs, D.F. Forest 11(1) DOI:10.3390/f11010072.
- The complete chloroplast genome sequence of American elm (Ulmus americana) and comparative genomics of related species 2020. Ebrahimi, A., Antonides, J.D., Pinchot, C.C., Slavicek, J.M., Flower, C.E., and Woeste, K.E. bioRxiv The preprint server for Biology.
- Remotely Sensed Mid-Channel Bar Dynamics in Downstream of the Three Gorges Dam, China 2020. Wen, Z., Yang, W., Zhang, C., Shao, G., and Wu, S. Remote Sensing 12(3):409.
2019
- Optimal forest management under financial risk aversion with discounted Markov decision process models 2019. Zhou, M. and Buongiomo, J. Canadian Journal of Forest Research 49(7):802-809.
- Accelerating upward treeline shift in the Altai Mountains under last-century climate change 2019. Cazzolla Gatti, R., Callaghan, T., Velichevskaya, A., Dudko, A.. Fabbio, L., Battipaglia, G., and Liang, J. Scientific Reports 9:7678.
- Parameterization of biodiversity-productivity relationship and its scale dependency using georeferenced tree-level data 2019. Luo, W., Liang, J., Cazzolla Gatti, R., Zhao, X., and Zhang, C. Journal of Ecology 107(3):1106-1119.
- Climatic controls of decomposition drive the global biogeography of forest-tree symbioses 2019. Steidinger, B.S., Crowther, T.W., Liang, J., Van Nuland, M.E., Werner, G.D.A., Reich, P.B., Nabuurs, G.J., de-Miguel, S., Zhou, M., Picard, N., Herault, B., Zhao, X., Zhang, C., Routh, D., Peay, K.G., and GFBI consortium Nature 569:404-408.
- Coastal Alaska forests under climate change: What to expect? 2019. Ma, W., Zhou, X., Liang, J. and Zhou, M. Forest Ecology and Management 448:432-444.
- Predicting invasiveness of exotic woody species using a traits-based framework 2019. Nunez-Mir, G.C., Guo, Q., and Fei, S. Ecology Ecological Society of America 100(10):e02797 DOI:https://doi.org/10.1002/ecy.2797.
- Using a tree seedling mortality budget as an indicator of landscape-scale forest regeneration security 2019. Vickers, L,A., McWilliams, W.H. ,Knapp, B.O., D'Amato, A.W., Saunders, M.R., Shifley, S.R., Kabrick, J.M., Dey, D.C., Larsen, D.R., and Westfall, J.A. Ecological Indicators 96(1):718-727.
- Short-term, spatial regeneration patterns following expanding group shelterwood harvests and prescribed fire in the Central Hardwood Region 2019. Greenler, S.M. and Saunders, M.R. Forest Ecology and Management 432:1053-1063.
- Shifts in forest composition in the eastern United States 2019. Knott, J.A., Desprez, J.M., Oswalt, C.M., and Fei, S. Forest Ecology and Management 433:176-183.
- Microbial mechanisms and ecosystem flux estimation for aerobic NOy emissions from deciduous forest soils 2019. Mushinski, R.M., Phillips, R.P., Payne, Z.C., Abney, R.B., Jo, I., Fei, S., Pusede,S.E., White, J.R.. Rusch, D.B. and Raff, J.D. PNAS 116(6):2138-2145.
- Influence of mulching and tree shelters on 4-year survival and growth of zeen oak (Quercus canariensis) seedlings 2019. Mechergui.T, Pardos, M., and Jacobs, D.F. Journal of Forestry Research 30:129-141.
- Natural regeneration of Pinus pinaster facilitates Quercus ilex survival and growth under severe deer browsing pressure 2019. Maltoni, Al., Mariotti, B. Tani, A., Martini, S., Jacobs, D.F., and Tognetti, R. Forest Ecology and Management 432:356-364.
- Microsatellite Borders and Micro-sequence Conservation in Juglans 2019. Ebrahimi, A., Mathur, S., Lawson, S.S., LaBonte, N.R., Lorch, A., Coggeshall,M.V., and Woeste, K.E. Scientific Reports 9:2748 DOI: https://doi.org/10.1038/s41598-019-39793-z.
- Delineation of individual deciduous trees in plantations with low-density LiDAR data 2019. Shao, G., Shao, G., and Fei, S. International Journal of Remote Sensing 40(1):346-363.
- Trends in ecology: shifts in ecological research themes over the past four decades 2019. McCallen, E., Knott, J., Nunez-Mir, G., Taylor, B., Insu, J., Fei, S. Frontiers in Ecology and the Environment 17(2):109-116.
- An integrated assessment of the potential impacts of climate change on Indiana forests 2019. Phillips, R.P., Brandt, L., Polly, P.D., Zollner, P., Saunders, M.R., Clay, K, Iverson, L., and Fei, S. Climatic Change DOI: https://doi.org/10.1007/s10584-018-2326-8.
- Shifts in dominant tree mycorrhizal associations in response to anthropogenic impacts 2019. Jo, I., Fei, S., Oswalt, C.M., Domke, G.M., and Phillips, R.P. Science Advances 5(4):eaav6358.
- Tree diversity regulates forest pest invasion 2019. Guo, Q., Fei, S., Potter, K.M., Liebhold, A.M., and Wen, J. PNAS 116(15):7382-7386.
- Mapping global forest biomass and its changes over the first decade of the 21st century 2019. Chen, A., Peng, S., and Fei, S. Science China Earth Sciences 62:585-594.
- Using a tree seedling mortality budget as an indicator of landscape-scale forest regeneration security 2019. Vickers, L.A., McWilliams, W.H., Knapp, B.O., D’Amato, A.W., Saunders, M.R., Shifley, S.R., Kabrick, J.M., Dey, D.D., Larsen, D.R., and Westfall, J.A. Ecological Indicators 96(1):718-727.
- Restoring forests: regeneration and ecosystem function for the future 2019. Lof, M., Madsen, P., Metslaid, M., Witzell, J., and Jacobs, D.F. New Forests 50:139-151.
- Regeneration niches in Nothofagus-dominated old-growth forest after partial disturbance: Insights to overcome arrested succession 2019. Soto, D.P, Puettmann, K.J., Fuentes, C., and Jacobs, D.F. Forest Ecology and Management 445:26-36.
- Photosynthetic parameters of Juglans nigra trees are linked to cumulative water stress 2019. Gauthier, M.M. and Jacobs, D.F. Canadian Journal of Forest Research 49:752-758.
- Effect of Prescribed Fire on Timber Volume and Grade in the Hoosier National Forest 2019. Stanis, S., Wiedenback, J., and Saunders, M.R. Forest Science 65(6):714-724 https://doi.org/10.1093/forsci/fxz039.
- Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut 2019. Zhang, B.W., Xu, L.L., Li, N., Yan, P.C., Jiang, X.H., Woeste, K.E., Lin, K., Renner, S.S., Zhang, D.Y. and Bai, W.N. Molecular Biology and Evolution 36(11):2451-2461 DOI:10.1093/molbev/msz112.
- Detection of Geosmithia morbida on Numerous Insect Species in Four Eastern States 2019. Moore, M., Juzwik, J., Miller, F., Roberts, L., and Ginzel, M.D. Plant Health Progress 20(3):133-139.
- Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery 2019. Yang, H., Zhang, X., Luo, H., Liu, B., Shiga,T.M., Li, X., Kim, J.I., Rubinelli, P., Overton, J.C., Subramanyam, V., Cooper, B.R., Mo, H., Abu-Omar, M.M., Chapple, C., Donohoe, B.S., Makowski, L., Mosier, N.S., McCann, M.C., Carpita, N.C., and Meilan, R. Biotechnology for Biofuels 12:171-188.
- High rates of primary production production in structurally complex forests 2019. Gough, C.M., Atkins, J.W., Fahey, R.T., and Hardiman, B.S. Ecology:100(10):e2864 https://doi.org/10.1002/ecy.2864.
- An enhanced strategy for molecular detection of thousand cankers disease 2019. Stackhouse, T., Oren, E., Boggess, S., Ginzel, M., Hadziabdic, D., Trigiano R., and Klingeman, W. Mid-Atlantic States Mycological Conference (MASMC) University of Tennessee-Knoxville April 12-14, 2019.
- Urban sprawl scenario simulations based on cellular automata and ordered weighted averaging ecological constraints 2019. Liao, J., Shao, G., Wang, C., Tang, L., Huang, Q., and Qiu, Q. Ecological Indicators Volume 107:105572.
- Ecologically distinct pine species show differential root development after outplanting in response to nursery nutrient cultivation 2019. Toca, A., Oliet, J.A., Villar-Salvador, P., Catalan, R.A.M., and Jacobs, D.F. Forest Ecology and Management Vol: 451:117562.
- Defining a spectrum of integrative trait-based vegetation canopy structural types 2019. Fahey, R.T., Atkins, J.W., Gough, C.M., Hardiman, B.S., Nave, L.E., Tallant, J.M., Nadehoffer, K.J., Vogel, C., Scheuermann, C.M., Stuart-Haentjens, E., Haber, L.T., Fotis, A.T., Ricart, R., and Curtis, P.S. Ecology Letters 22(12):2049-2059 DOI: 10.1111/ele.13388.
- Structural diversity as a predictor of ecosystem function 2019. LaRue, E.A., Hardiman, B.S., Elliott, J.M., and Fei, S. Environmental Research Letters 14(11)114011.
- Overselling overall map accuracy misinforms about research reliability 2019. Shao, G., Tang, L. and Liao, J. Landscape Ecology 34:2487-2492.
- Rhamnogalacturonan-I is a determinant of cell-cell adhesion in poplar wood 2019. Yang, H., Benatti, M.R., Karve, R.A., Fox, A., Meilan, R., Carpita, N.C., and McCann, M.C. Plant Biotechnology Journal (https://doi.org/10.1111/pbi.13271)
- Age structure and recruitment of Trillium luteum (Trilliaceae) populations in secondary forests of the southern Appalachian Mountains 2019. Jenkins, M.A. and Webster, C.R. The Journal of the Torrey Botanical Society 146(4): 239-251.
- Herbivory and Competing Vegetation Interact as Site Limiting Factors in Maritime Forest Restoration 2019. Thyroff, E.C., Burney, O.T., and Jacobs, D.F. Forest 10, 950; doi:10.3390/f10110950.
- Unraveling Shade Tolerance and Plasticity of Semi-Evergreen Oaks: Insights From Maritime Forest Live Oak Restoration 2019. Thyroff, E.C., Burney, O.T., Mickelbart, M.V. and Jacobs, D.F. Frontiers in Plant Science DOI: 10.3389/fpls.2019.01526.
- Spatial and Climatic Factors Influence Ambrosia Beetle (Coleoptera: Curculionidae) Abundance in Intensively Managed Plantations of Eastern Black Walnut 2019. Williams, G.M. and Ginzel, M.D. Environmental Entomology DOI: 10.1093/ee/nvz125.
- Population genetic structure and adaptive differentiation of iron walnut Juglans regia subsp. sigillata in southwestern China 2019. Sun, Y.W., Hou, N., Woeste, K., Zhang, C., Yue, M., Yuan, X.Y., and Zhao, P. Ecology and Evolution DOI: 10.1002/ece3.5850.
- Water stress rather than N addition mitigates impacts of elevated O3 on foliar chemical profiles in popular saplings 2019. Li, Z., Yang, J., Shang, B., Xu, Y., Couture, J.J., Yuan, X., Kobayashi, K., and Feng, Z. Science of The Total Environment.
- Implications of climate change for managing urban green infrastructure: an Indiana, US case study 2019. Reynolds, H.L., Brandt, L., Fischer, B.C., Hardiman, B.S., Moxley, D.J., Sandweiss, E., Speer, J.H., and Fei, S. Climate Change DOI: https://doi.org/10.1007/s10584-019-02617-0.
- Surface and subsurface material selections influence the early outcomes of boreal upland forest restoration 2020. Stack, S., Jones, C., Bockstette, J., and Jacobs, D.F. Ecological Engineering 144:1057052.
- Implications of climate change for managing urban green infrastructure: an Indiana, US case study 2019. Reynolds, H.L., Brandt, L., Fischer, B.C., Hardiman, B.S., Moxley, D.J., Sandweiss, E., Speer, J.H., and Fei, S. Climate Change DOI: https://doi.org/10.1007/s10584-019-02617-0.
2018
- Pooled whole-genome sequencing of interspecific chestnut (Castanea) hybrids reveals loci associated with differences in caching behavior of fox squirrels (Sciurus niger L.) 2018. LaBonte, N.R. and Woeste, K.E. Ecology and Evolution 8(22):10638-10654.
- Simulated predation of of Quercus variabills acorns impairs nutrient remobilzation and seedlings performance irrespective of soil fertility 2018. Shi, W., Villar-Salvador, P., Jacobs, D.F., Li, G., and Jiang, X. Plant and Soil 423:295-306.
- Alleviation of heavy metal phytotoxicity in sewage sludge by vermlcoposting with additive urban plant litter 2018. Wu, D., Yu, X., Chu,S, Jacobs, D.F., Wei, X., Wang, C., Long, F., Chen, X., and Zeng, S. Science of the Total Environment 633:71-80.
- Trends in Production of Hardwood Tree Seedlings Across the Northeast United States From 2008 to 2016 2018. Pike, C., Warren, J., and Coggeshall, M. Tree Planter's Notes 61(1):18-25.
- Reproduction and potential range expansion of walnut twig beetle across the Juglandaceae 2018. Hefty, A.R., Aukema, B.H., Venette, R.C., Coggeshall, M.V., McKenna, J.R., and Seybold, S.J. Biological Invasions 20(8):2141-2155.
- A novel molecular toolkit for rapid detection of the pathogen and primary vector of thousand cankers disease 2018. Oren, E., Klingeman, W., Gazis, R., Moulton, J., Lambdin, P., Coggeshall, M., Hulcr, J., Seybold, S.J., and Hadziabdic, D. PLoS ONE 13(1):e018587,
- Discrimination and assessment of black walnut (Juglans nigra L.) cultivars using phenology and microsatellite markers (SSRs) 2018. Zhao, P., Zhou, H., Coggeshall, M.V., and Chung-Ho, L. Canadian Journal of Plant Science 98(3):616-627.
- Identification and Characterization of Phenolic Compounds in Black Walnut Kernels 2018. Vu, D.C., Vo, P.H., Coggeshall, M.V., and Lin, C.H. Journal of Agriculture and Food Chemistry 66(17):4503-4511.
- Genomic Variation Among and Within Six Juglans Species 2018. Stevens, K.A., Woeste, K., Chakraborty, S., Crepeau, M.W., Leslie, C.A., Martinez-Garcia, P.J., Puiu, D., Romero-Sevenson, J., Coggeshall, M., Dandekar, A.M., Kluepfel, D., Neale, D.B., Salzberg, S.L., and Langley, C.H. Genes Genomes Genetics 8(7):2153-2165.
- Pollen flow and paternity in an isolated and non-isolated black walnut (Juglans nigra L.) timber seed orchard 2018. Ebrahimi, A., Lawson, S.S., Frank, G.S., Coggeshall, M.V., Woeste, K.E., McKenna, J.R. PLoS ONE 13(12):e0207861.
- Growth traits of juvenile American chestnut and red oak as adaptations to disturbance 2018. Belair, E.P., Saunders, M.R., and Landhausser, S.M. Restoration Ecology 26(4):712-719.
- Ten-Year Responses of Underplanted Northern Red Oak to Silvicultural Treatments, Herbivore Exclusion, and Fertilization 2018. Frank, G.S., Rathfon, R.A., and Saunders, M.R. Forests 9(9):571.